Package: Bayenet 0.2

Xi Lu

Bayenet: Bayesian Quantile Elastic Net for Genetic Study

As heavy-tailed error distribution and outliers in the response variable widely exist, models which are robust to data contamination are highly demanded. Here, we develop a novel robust Bayesian variable selection method with elastic net penalty for quantile regression in genetic analysis. In particular, the spike-and-slab priors have been incorporated to impose sparsity. An efficient Gibbs sampler has been developed to facilitate computation.The core modules of the package have been developed in 'C++' and R.

Authors:Xi Lu [aut, cre], Cen Wu [aut]

Bayenet_0.2.tar.gz
Bayenet_0.2.zip(r-4.7)Bayenet_0.2.zip(r-4.6)Bayenet_0.2.zip(r-4.5)
Bayenet_0.2.tgz(r-4.6-x86_64)Bayenet_0.2.tgz(r-4.6-arm64)Bayenet_0.2.tgz(r-4.5-x86_64)Bayenet_0.2.tgz(r-4.5-arm64)
Bayenet_0.2.tar.gz(r-4.7-arm64)Bayenet_0.2.tar.gz(r-4.7-x86_64)Bayenet_0.2.tar.gz(r-4.6-arm64)Bayenet_0.2.tar.gz(r-4.6-x86_64)
Bayenet_0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
Bayenet/json (API)

# Install 'Bayenet' in R:
install.packages('Bayenet', repos = c('https://xilustat.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/xilustat/bayenet/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • clin - Simulated data for demonstrating the features of Bayenet.
  • coef - Simulated data for demonstrating the features of Bayenet.
  • X - Simulated data for demonstrating the features of Bayenet.
  • Y - Simulated data for demonstrating the features of Bayenet.

On CRAN:

Conda:

openblascppopenmp

2.70 score 2 scripts 234 downloads 2 exports 16 dependencies

Last updated from:78fc630b33. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK140
linux-devel-x86_64OK136
source / vignettesOK195
linux-release-arm64OK142
linux-release-x86_64OK143
macos-release-arm64OK207
macos-release-x86_64OK342
macos-oldrel-arm64OK206
macos-oldrel-x86_64OK246
windows-develOK137
windows-releaseOK271
windows-oldrelOK200
wasm-releaseOK134

Exports:BayenetSelection

Dependencies:codagslhbmemlatticeMASSMatrixMatrixModelsmcmcMCMCpackquantregRcppRcppArmadilloSparseMSuppDistssurvivalVGAM