Package: Bayenet 0.2

Bayenet: Bayesian Quantile Elastic Net for Genetic Study

As heavy-tailed error distribution and outliers in the response variable widely exist, models which are robust to data contamination are highly demanded. Here, we develop a novel robust Bayesian variable selection method with elastic net penalty for quantile regression in genetic analysis. In particular, the spike-and-slab priors have been incorporated to impose sparsity. An efficient Gibbs sampler has been developed to facilitate computation.The core modules of the package have been developed in 'C++' and R.

Authors:Xi Lu [aut, cre], Cen Wu [aut]

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Bayenet/json (API)

# Install 'Bayenet' in R:
install.packages('Bayenet', repos = c('https://xilustat.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/xilustat/bayenet/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • X - Simulated data for demonstrating the features of Bayenet.
  • Y - Simulated data for demonstrating the features of Bayenet.
  • clin - Simulated data for demonstrating the features of Bayenet.
  • coef - Simulated data for demonstrating the features of Bayenet.

On CRAN:

3.18 score 230 downloads 2 exports 16 dependencies

Last updated 7 months agofrom:78fc0026e7. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 09 2024
R-4.5-win-x86_64OKNov 09 2024
R-4.5-linux-x86_64OKNov 09 2024
R-4.4-win-x86_64OKNov 09 2024
R-4.4-mac-x86_64OKNov 09 2024
R-4.4-mac-aarch64OKNov 09 2024
R-4.3-win-x86_64OKNov 09 2024
R-4.3-mac-x86_64OKNov 09 2024
R-4.3-mac-aarch64OKNov 09 2024

Exports:BayenetSelection

Dependencies:codagslhbmemlatticeMASSMatrixMatrixModelsmcmcMCMCpackquantregRcppRcppArmadilloSparseMSuppDistssurvivalVGAM